发表论文
Liu, Y., Liu, S., Pan, Z., Ren, Y., Jiang, Y., Wang, F., Li, D., Li, Y. Z.*, & Zhang, Z.* (2023). PAT: a comprehensive database of prokaryotic antimicrobial toxins. Nucleic Acids Research, 51(D1): D452-D459. (5 Year Impact Factor: 17.210)
Li, D., Zhang, Z.*, Wang, J., Zhang, P., Liu, Y. & Li, Y. Z.* (2023) Estimate of the degradation potentials of cellulose, xylan, and chitin across global prokaryotic communities. Environmental Microbiology, 25(2): 397-409. (5 Year Impact Factor: 6.820)
Ding, P., Ming, Z., Liu, J., Erill, I., & Zhang, Z.* (2022). Microbiome and microbial informatics. Frontiers in Microbiology, 4278. (5 Year Impact Factor: 6.843)
Zhang, P., Zhang, L., Jiang, X., Diao, X. T., Li, S., Li, D. D., Zhang, Z., Fang, J., Tang Y. J., Wu, D. L., Wu, C., & Li, Y. Z. (2022). Docking-guided rational engineering of a macrolide glycosyltransferase glycodiversifies epothilone B. Communications Biology, 5(1): 1-11. (5 Year Impact Factor: 6.816)
Zhang, Z.1*, Liu, Y.1, Zhang, P., Wang, J., Li, D., & Li, Y. Z.* (2021). PAAR proteins are versatile clips that enrich the antimicrobial weapon arsenals of prokaryotes. mSystems, 6(6): e00953-21. (5 Year Impact Factor: 9.039)
Li, D., Wang, J. L., Liu, Y., Li, Y. Z.*, & Zhang, Z.* (2021). Expanded analyses of the functional correlations within structural classifications of glycoside hydrolases. Computational and Structural Biotechnology Journal, 19: 5931. (5 Year Impact Factor: 6.836)
Feng, Z.1, Zhang, Z. 1, Liu, Y., Gu, J., Cheng, Y., Hu, W., Li, Y. Z., & Han, W.* (2021). The second chromosome promotes the adaptation of the genus Flammeovirga to complex environments. Microbiology Spectrum, 9(3): e00980-21. (5 Year Impact Factor: 8.113)
Wang, J.1, Wang, J.1, Wu, S., Zhang, Z.*, & Li, Y. Z.* (2021). Global geographic diversity and distribution of the myxobacteria. Microbiology Spectrum, 9(1): e00012-21. (5 Year Impact Factor: 8.113)
Pan, Z., Zhang, Z., Zhuo, L., Wan, T., & Li, Y. Z.* (2021). Bioinformatic and functional characterization of Hsp70s in Myxococcus xanthus. mSphere, 6(3): e00305-21. (5 Year Impact Factor: 5.492)
Liu, Y., Wang, J., Zhang, Z., Wang, F., & Li, Y. Z.* (2021). Two PAAR proteins with different C-terminal extended domains have distinct ecological functions in Myxococcus xanthus. Applied and Environmental Microbiology, 87(9): e00080-21. (5 Year Impact Factor: 5.632)
Zhang, Z.1*, Wang, J.1, Wang, J., Wang, J., & Li, Y. Z.* (2020). Estimate of the sequenced proportion of the global prokaryotic genome. Microbiome, 8(1): 1-9. (5 Year Impact Factor: 19.813)
Liu, Y., Zhang, Z.*, Wang, F., Li, D. D., & Li, Y. Z.* (2020). Identification of type VI secretion system toxic effectors using adaptors as markers. Computational and Structural Biotechnology Journal, 18: 3723-3733. (5 Year Impact Factor: 6.836)
Zhang, P.1, Zhang, Z.1, Zhang, L., Wang, J., & Wu, C.* (2020). Glycosyltransferase GT1 family: Phylogenetic distribution, substrates coverage, and representative structural features. Computational and Structural Biotechnology Journal, 18: 1383-1390. (5 Year Impact Factor: 6.836)
Wang, J., Wang, J., Zhang, Z., Li, Z., Zhang, Z., Zhao, D., ... & Li, Y. Z.* (2020). Shifts in the bacterial population and ecosystem functions in response to vegetation in the Yellow River delta wetlands. mSystems, 5(3). (5 Year Impact Factor: 9.039)
Chen, X. J., Zhang, Z., Li, Y. J., Zhuo, L., Sheng, D. H., & Li, Y. Z.* (2020). Insights into the persistence and phenotypic effects of the endogenous and cryptic plasmid pMF1 in its host strain Myxococcus fulvus 124B02. FEMS Microbiology Ecology, 96(3): fiaa001. (5 Year Impact Factor: 5.780)
Li, D., Wang, J., Jin, Z., & Zhang, Z.* (2019). Structural and evolutionary characteristics of dynamin-related GTPase OPA1. PeerJ, 7: e7285. (5 Year Impact Factor: 3.369)
Zhang, P., Zhang, Z., Li, Z. F., Chen, Q., Li, Y. Y., Gong, Y., ... & Li, Y. Z.* (2019). Phylogeny‐guided characterization of glycosyltransferases for epothilone glycosylation. Microbial Biotechnology, 12(4): 763-774. (5 Year Impact Factor: 7.412)
Zhang, Z., Wang, J., Gong, Y., & Li, Y. Z.* (2018). Contributions of substitutions and indels to the structural variations in ancient protein superfamilies. BMC Genomics, 19(1): 1-9. (5 Year Impact Factor: 4.930)
Gong, Y.1, Zhang, Z.1, Liu, Y., Zhou, X. W., Anwar, M. N., Li, Z. S., ... & Li, Y. Z.* (2018). A nuclease‐toxin and immunity system for kin discrimination in Myxococcus xanthus. Environmental Microbiology, 20(7): 2552-2567. (5 Year Impact Factor: 6.820)
Zhuo, L., Zhang, Z., Pan, Z., Sheng, D. H., Hu, W., & Li, Y. Z.* (2018). CIRCE element evolved for the coordinated transcriptional regulation of bacterial duplicate groELs. Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms, 1861(10): 928-937. (5 Year Impact Factor: 5.214)
Li, Y. J., Liu, Y., Zhang, Z., Chen, X. J., Gong, Y., & Li, Y. Z.* (2018). A post-segregational killing mechanism for maintaining plasmid pMF1 in its Myxococcus fulvus host. Frontiers in Cellular and Infection Microbiology, 8: 274. (5 Year Impact Factor: 6.340)
Gong, Y., Zhang, Z., Zhou, X. W., Anwar, M. N., Hu, X. Z., Li, Z. S., ... & Li, Y. Z.* (2018). Competitive interactions between incompatible mutants of the social bacterium Myxococcus xanthus DK1622. Frontiers in Microbiology, 9: 1200. (5 Year Impact Factor: 6.843)
Yue, X. J.1, Cui, X. W.1, Zhang, Z., Hu, W. F., Li, Z. F., Zhang, Y. M., & Li, Y. Z.* (2018). Effects of transcriptional mode on promoter substitution and tandem engineering for the production of epothilones in Myxococcus xanthus. Applied Microbiology and Biotechnology, 102(13): 5599-5610. (5 Year Impact Factor: 5.365)
Gao, X.*, Zhang, Z.*, Li, Y., Zhu, H., Wang, S., & Li, C. (2017). A newly determined member of the meso-diaminopimelate dehydrogenase family with a broad substrate spectrum. Applied and Environmental Microbiology, 83(11). (5 Year Impact Factor: 5.632)
Liu, L., Zhang, Z.*, Shao, C. L., & Wang, C. Y.* (2017). Analysis of the sequences, structures, and functions of product-releasing enzyme domains in fungal polyketide synthases. Frontiers in Microbiology, 8: 1685. (5 Year Impact Factor: 6.843)
Yue, X. J., Cui, X. W., Zhang, Z., Peng, R., Zhang, P., Li, Z. F., & Li, Y. Z.* (2017). A bacterial negative transcription regulator binding on an inverted repeat in the promoter for epothilone biosynthesis. Microbial Cell Factories, 16(1): 1-12. (5 Year Impact Factor: 6.496)
Zhuo, L.1, Wang, Y.1, Zhang, Z., Li, J., Zhang, X. H., & Li, Y. Z.* (2017). Myxococcus xanthus DK1622 coordinates expressions of the duplicate groEL and single groES genes for synergistic functions of groELs and groES. Frontiers in Microbiology, 8: 733. (5 Year Impact Factor: 6.843)
Peng, R., Chen, J. H., Feng, W. W., Zhang, Z., Yin, J., Li, Z. S., & Li, Y. Z.* (2017). Error-prone DnaE2 balances the genome mutation rates in Myxococcus xanthus DK1622. Frontiers in Microbiology, 8: 122. (5 Year Impact Factor: 6.843)
Wang, J., Zhang, Z.*, Chang, F., & Yin, D.* (2016). Bioinformatics analysis of the structural and evolutionary characteristics for toll-like receptor 15. PeerJ, 4: e2079. (5 Year Impact Factor: 3.369)
Wang, J.1, Zhang, Z.1*, Liu, J., Zhao, J., & Yin, D.* (2016). Ectodomain architecture affects sequence and functional evolution of vertebrate toll-like receptors. Scientific Reports, 6(1): 1-10. (5 Year Impact Factor: 5.516)
Liu, L., Zhang, Z.*, Shao, C. L., Wang, J. L., Bai, H., & Wang, C. Y.* (2015). Bioinformatical analysis of the sequences, structures and functions of fungal polyketide synthase product template domains. Scientific Reports, 5(1): 1-12. (5 Year Impact Factor: 5.516)
Wang, J.1, Zhang, Z.1*, Fu, H., Zhang, S., Liu, J., Chang, F., ... & Yin, D.* (2015). Structural and evolutionary characteristics of fish-specific TLR19. Fish & Shellfish Immunology, 47(1): 271-279. (5 Year Impact Factor: 4.799)
Wang, J., Zhang, Z.*, Liu, J., Li, F., Chang, F., Fu, H., ... & Yin, D.* (2015). Structural characterization and evolutionary analysis of fish-specific TLR27. Fish & Shellfish Immunology, 45(2): 940-945. (5 Year Impact Factor: 4.799)
Wang, Y.1, Zhang, W. Y.1, Zhang, Z., Li, J., Li, Z. F., Tan, Z. G., ... & Li, Y. Z.* (2013). Mechanisms involved in the functional divergence of duplicated GroEL chaperonins in Myxococcus xanthus DK1622. PLoS Genet, 9(2): e1003306. (5 Year Impact Factor: 6.514)
Zhang, Z.1, Xing, C.1, Wang, L., Gong, B.*, & Liu, H. (2012). IndelFR: a database of indels in protein structures and their flanking regions. Nucleic Acids Research, 40(D1): D512-D518. (5 Year Impact Factor: 17.210)
Zhang, Z., Huang, J., Wang, Z., Wang, L.*, & Gao, P. (2011). Impact of indels on the flanking regions in structural domains. Molecular Biology and Evolution, 28(1): 291-301. (5 Year Impact Factor: 20.074)
Zhang, Z., Wang, Y., Wang, L.*, & Gao, P.* (2010). The combined effects of amino acid substitutions and indels on the evolution of structure within protein families. PLoS One, 5(12): e14316. (5 Year Impact Factor: 4.069)
